Cписок миРНК риса, специфичных для него и других видов растений.

1miRNAs ID miRNA sequences 0 1 2 3 2RPKM 7Log2 Ratio 8Species
miR-5p miR-3p Reads Reads Reads Reads 3C 41d 52d 63d 1d/C 2d/C 3d/C
Constitutive high expressed miRNAs
miR-162a ucgauaaaccucugcauccag 78 115 41 51 480,654 708,656 252,651 314,274 0.56 -0.93 -0.61 Pt
miR-164a uggagaagcagggcacgugca 17 22 23 25 114,831 148,604 155,359 168,869 0.37 0.44 0.56 Mt, Ptc, Bd
miR-164f uggagaagcagggcacgugca 1412 1381 1697 1554 7,085,152 6,929,600 8,515,229 7,797,682 -0.03 0.27 0.14 Mt, Ptc, Bd
miR-167h ugaagcugccagcaugaucug aggucaugcuguaguuucauc 61 36 34 48 535,652 316,122 298,560 421,496 -0.76 -0.84 -0.35 At, Pp, Pt
miR-169c cagccaaggaugacuugccgg 11 11 15 7 103,492 103,492 141,126 65,859 0.00 0.45 -0.65 At, Os, Mt, Ppe, Gm, Pto, Peu
miR-169g uagccaaggaugacuugccua 74 45 102 114 618,864 376,336 853,028 953,385 -0.72 0.46 0.62 At, Os, Mt, Ppe, Gm, Pto, Peu
miR-169i uggugauaaggguguagcucug ugagucgcucuuaucacucaug 60 44 107 84 585,412 429,302 1,043,984 819,576 -0.45 0.83 0.49 At, Os, Mt, Ppe, Gm, Pto, Peu
miR-394 uuggcauucuguccaccucc 6 4 7 0 57,477 38,318 67,056 – -0.58 0.22 – Pto, Ptc, Gm
miR-397b uuauugagugcagcguugaug 3 4 4 3 26,790 35,720 35,720 26,790 0.42 0.42 0.00 At, Os, Ppe, Pto
miR-408 cagggaugaggcagagcaugg cugcacugccucuucccuggc 392 427 608 470 1,939,279 2,112,429 3,007,861 2,325,156 0.12 0.63 0.26 Os, At, Mt, Ppe, Pto, Ptc
miR-414 ucauccucaucaucaucgucc 29 22 27 32 288,288 218,701 268,406 318,110 -0.40 -0.10 0.14 –
miR-435 uuauccgguauuggaguuga 84 74 133 65 670,562 590,733 1,061,724 518,888 -0.18 0.66 -0.37 –
miR-437 aaaguuagagaaguuugacuu 149 139 150 80 737,124 687,652 742,071 395,771 -0.10 0.01 -0.90 –
miR-439d ugucgaaccgcgguuguucga 5 8 3 8 53,762 86,020 32,257 86,020 0.68 -0.74 0.68 –
miR-812a gacggacgguuaaacguuggac 517 517 507 318 2,328,137 2,328,137 2,283,105 1,432,007 0.00 -0.03 -0.70 –
miR-812b gacggacgguuaaacguuggac 988 1060 1129 1503 6,124,093 6,570,384 6,998,078 9,316,308 0.10 0.19 0.61 –
miR-812c gacggacgguuaaacguuggac 199 209 263 380 1,278,624 1,342,877 1,689,840 2,441,594 0.07 0.40 0.93 –
miR-812d gacggacgguuaaacguuggac 335 334 322 220 2,307,210 2,300,323 2,217,677 1,515,183 0.00 -0.06 -0.61 –
miR-812e gacggacgguuaaacguuggac 541 528 483 382 3,353,375 3,272,795 2,993,864 2,367,818 -0.04 -0.16 -0.50 –
miR-815b aaggggauugaggagauuggg 217 202 478 141 1,758,937 1,637,351 3,874,524 1,142,903 -0.10 1.14 -0.62
miR-816 gugacauauuuuacuacaac 11 7 22 10 150,534 95,795 301,069 136,849 -0.65 1.00 -0.14
miR-818c aaucccuuauauuaugggacgg 15 20 9 9 89,807 119,743 53,884 53,884 0.42 -0.74 -0.74 –
miR-818e aaucccuuauauuaugggacgg 824 918 1275 956 3,859,033 4,299,262 5,971,198 4,477,227 0.16 0.63 0.21 –
miR-820b ucggccucguggauggaccag 35 64 22 0 193,094 353,086 121,373 – 0.87 -0.67 –
miR-821a aagucaucaacaaaaaaguugaau 135 192 169 148 519,179 738,388 649,935 569,174 0.51 0.32 0.13 –
miR-821b aagucaucaacaaaaaaguugaau 24 33 22 25 88,118 121,162 80,775 91,789 0.46 -0.13 0.06 –
Low expressed miRNAs
miR-156a ugacagaagagagugagcac 0 0 1 0 – – 10,537 – – – – At, Td, Tt, Hv, Os, Peu, Ppe, Pto
miR-156c ugacagaagagagugagcac gcucacuucucucucugucagc 0 2 0 0 – 14,144 – – – – – At, Td, Tt, Hv, Os, Peu, Ppe, Pto
miR-159c auuggauugaagggagcucca 0 1 5 0 – 5,349 26,745 – – – – At, Peu, Os, Ppe
miR-160b ugccuggcucccuguaugcca gcgugcaaggagccaagcaug 5 10 3 0 37,904 75,809 22,743 – 1.00 -0.74 – Me, Me, Peu, Ppe, Pto, Ptc
miR-160d ugccuggcucccuguaugcca gcgugcgaggagccaagcaug 0 0 0 1 – – – 7,421 – – – Me, Me, Peu, Ppe, Pto, Ptc
miR-164b uggagaagcagggcacgugca 0 7 1 0 – 67,671 9,667 – – – – Mt, Pt, Bd
miR-164d uggagaagcagggcacgugcu 0 0 1 0 – – 11,210 – – – – Mt, Pt, Bd
miR-167i ugaagcugccagcaugaucug agaucauguugcagcuucacu 0 0 0 2 – – – 10,485 – – – At, Ppe, Pto, Peu, Me, Me
miR-169j uagccaaggaugacuugccug 0 1 0 0 – 8,430 – – – – – At, Os, Mt, Ppe, Gm, Pto, Peu
miR-169k uagccaaggaugacuugccug 1 0 0 0 6,755 – – – – – – At, Os, Mt, Ppe, Gm, Pto, Peu
miR-171c ggauauuggugcgguucaauc ugauugagccgugccaauauc 0 0 2 0 – – 21,288 – – – – At, Td, Os, Os, Mt, Ppe, Pto
miR-319b uuggacugaagggugcuccc 0 2 0 0 – 10,698 – – – – – At, Os, Os, Pto
miR-395e gugaaguguuugggggaacuc 1 0 0 0 11,974 – – – – – – Os, Ppe, Pto
miR-395h gugaaguguuugggggaacuc 0 0 1 0 – – 9,408 – – – – Os, Ppe, Pto
miR-396e uccacaggcuuucuugaacug augguucaagaaagcccauggaaa 3 0 0 1 17,181 – – 5,727 – – -1.58 At, Os, Mt, Ppe
miR-397a ucauugagugcagcguugaug 0 0 0 2 – – – 18,487 – – – At, Os, Mt, Ppe, Pto, Peu
miR-397a ucauugagugcagcguugaug 0 0 0 2 – – – 18,487 – – – At, Os, Mt, Ppe, Pto, Peu
miR-399a ugccaaaggagaauugcccug 0 0 0 1 – – – 7,072 – – – Mt, Pto, Pto
miR-419 ugaugaaugcugacgauguug 0 14 4 0 – 143,227 40,922 – – – – –
miR-426 uuuuggaaguuuguccuuacg 0 0 0 2 – – – 14,240 – – –
miR-814b cacuucauaguacaacgaaucu 3 0 0 0 42,719 – – – – – – –

List of miRNAs that are constitutive pattern of high expression and low expression level. 1 Bold in miRNAs ID, rice specific drought responsive miRNAs; 2 RPKM, Reads Per Kilobase of transcript per Million mapped reads; 3 C, control; 4 1d, drought treatment for 1 day; 5 2d, drought treatment for 2 days; 6 3d, drought treatment for 3 days; 7 log2 ratio, log2(drought treatment / control), 8 Red, up-regulation by drought; Blue, down-regulation by drought Abbreviations: At, Arabidopsis thaliana; Bd, Brachypodium distachyon; Gm, Glycine max; Hv, Hordeum vulgare; Mt, Medicago truncatula; Me, Manihot esculenta; Pv, Phaseolus vulgaris; Peu, Populus euphratica; Ptc, Populus trichocarpa; Ppe, Prunus persica; Pte: Populus tremula; Pto, Populus tomentosa; Td, Triticum dicoccoides; Tt, Triticum turgidum; Os, Oryza sativa; Vu, Vigna unguiculata; Zm, Zea mays