Маркеры QTL F2 3 месяца

Polymorphic microsatellite markers used in the QTL analysis performed on 3-4-month old F2 hybrid males (n=103) derived from a cross of ISIAH and WAG rats (total 145 markers). Position of markers is given in megabases (Mb) according to RGSC Genome Assembly v 5.0.
N
Маrker
Position on chromosome,
Mb
Primers, 5′->3′
Annealing temperature,
оС
Expected length of PCR fragment,
n
Distance between adjacent markers,Mb
Chromosome 1  (length of chromosome 289.8 Mb)
1
D1Rat150
17.49
AGAGGCAATGAAGTCCCTGA
ATCCAGTGTCAACCTTTGGC
64
238
31.1
2
D1Rat234
48.6
GGGTACACTGGACTGGGAAA
GCTGCCATTTAGTCTGGCTT
62
152
10.7
3
D1Rat196
59.28
TGCTTTTCAGATTCTCCTCC
TACTGAGTCAATTTCTCTTGG
62
177
47.8
4
D1Rat30
107.05
AATTTCTGTCCCACATTTCCC
TTCCAGGGACAAGCTACCTG
64
223
31.0
5
D1Rat183
138.08
CAGAAGCAAGCACACCAGTC
TGTATTGGCTGGGAAGTTGG
64
226
21.1
6
D1Rat131
159.18
TCTGCGACTACCTTGGGTTT
CCAGCAATTGAAATAACATTTTCA
64
176
22.7
7
D1Rat54
181.90
CTGACGGAAAAAAGGACAGG
GTCTGCCTGCTGGGATTAAG
64
173
42.3
8
D1Rat168
224.22
AAGGAGCCACTAACTGTTCCC TCTCCAAAGCGGCTGAGTAT
64
210
16.4
9
D1Rat117
240.60
CCATGAGTTGCCATGGCTAT
AATGCCACACAGAGAAGGGT
64
125
11.6
10
D1Rat76
252.24
GAAAGAGTGTGCGTGTGCAT
CTTCTGTCTCCTCGCCAATC
64
144
20.0
11
D1Rat81
272.24
TGGTTCCAATGGATACCCATA
TGAAGACTGAATCCCCCAAC
64
169
8.96
12
D1Rat86
281.20
AATACATGATGCTGTGGATTGG ACCCATTCCCACACCTGTAC
64
143
Chromosome 2  (length of chromosome 285.1 Mb)
1
D2Rat3
8.46
ACATGATGTGGAATTCCCCC
TCTCTGGTGGATACCTCACAAA
62
127
39.4
2
D2Rat194
47.82
AGAGTGGATTTGAGAGCAGC
TTTCTTTCTGTCTGGTTCTTCC
60
220
19.2
3
D2Rat17
67.06
TATCCTGAAAGGGCAACACC
TCACACACACTCAGGCTCGT
62
129
33.2
4
D2Rat75
100.30
TGCATGTTTCTATCTGCCCA
AAGGATATGAGTAGATGAACG
58
121
25.6
5
D2Rat143
125.88
AGAAAATGGTTTGTGCTGGG
TAACTCTTCCAGCCTCCCG
60
245
47.6
6
D2Rat224
173.44
ACTCTCACCCCTCCACACAT
TGTAAGGTTGAGTAGTCTTGC
62
160
41.9
7
D2Rat157
215.3
AGCAGGAACATGGAGGAATG
GTCCCACCATTGAGGCATAG
62
213
33.1
8
D2Rat88
248.34
TGGGTCACTTTTCCCCATTA
TTCCTGCATCTCCAGCAATA
58
128
19.8
9
D2Rat66
268.12
AACATGCCCATGAAAGTCTTG
ATTGCACATACACACGTGCC
60
175
13.7
10
D2Rat70
281.85
TGCTACTGGAAAATCTGGCA
CATGGGAACATAAACGCACA
58
165
Chromosome 3  (length of chromosome 183.4 Mb)
1
D3Rat56
2.60
AGTGAAGCCATCTTTTGGGG
CTTGGACTTGACCTGCCACT
63
175
13.35
2
D3Rat194
15.95
GGTATCACTGCTCCACTCC
CTGTGAGGACTGTTTGAATCT
60
220
39.3
3
D3Rat130
55.23
AGAGAGTTGCCAAAATCATTC
GTTATTGCCCATGGTTTGTAG
60
205
32.6
4
D3Rat31
87.84
CGACCAACAGGAAAACTTCAA
ATCCACACAGTCCAAAGCAG
60
173
11.5
5
D3Rat27
99.30
CCTGAAACTCACTAATTTGGC
AAGACCCACATTCATCACGC
60
172
21.1
6
D3Rat111
120.44
ACTTTACAACCACCTCTTCAG
CCACAAATGTTTTCTCTGGC
60
159
11.0
7
D3Rat71
131.46
GACGGGACGAGAAGAGATCA
AGTTGTTTGTGGCATGCACAC
62
130
23.7
8
D3Rat146
155.12
AGTCATGGTTGGGGTTGGTC
GAGAGAAGAGGGAGGGGATG
62
145
Chromosome 4  (length of chromosome 248.3 Mb)
1
D4Rat17
46.55
AGGAATCTCTACACTGCTTT
CACTCTTCCCTGAAAATGTA
56
135
13.0
2
D4Rat20
59.52
CCTCAGAGGTCAGCATCTCC
TGTGGTCTCTTCTTCCCTAG
62
150
78.3
3
D4Rat27
137.81
ATCCCAACCATTTCTAGCCC
ATGAGTCTGGTTTGCCTATC
60
125
13.2
4
D4Rat76
150.96
GTTAAGGAACCATGGGCTGA
GTATGTTTCCTTCCTGCCCC
62
174
24.4
5
D4Rat177
175.32
GGAGAACAGAACATTCCCGA
CTTTGGTGATTGACACCAGC
61
201
21.3
6
D4Rat57
196.63
CTTGACTTTGGTTCCCACGT
GCCTCTTCATTTGCTTCTTAG
60
175
19.1
7
D4Rat61
215.07
TTGTCCTTCTTCGACCTGCT
GATGGTGCCAGTCTAGGTG
62
157
18.2
8
D4Rat68
233.27
TTCCCAAGTGCTGGAGTTGT
CAGGACTTGGTGCATGCTAA
60
167
10.3
9
D4Rat140
243.54
GGCCCATTTGTTTGTTAAGC
TTCACATACGTGGCACACAA
58
146
Chromosome 5  (length of chromosome 177.2  Mb)
1
D5Rat119
3.24
TGCCAATAGTTCCTCAGATAG
AAAAGAAACGTCATGCTGGG
60
170
19.6
2
D5Rat188
22.82
TCTGACTTCTGGAAACTCTGA
AGTTTCAGGAAGTCTGGTGC
60
162
17.6
3
D5Rat70
40.45
CAGAGATGAGATGCCTGCCT
GGAGAGCCCACATTGAAACT
61
249
15.7
4
D5Rat6
56.14
TGGTGGTTGAAAAAGGATCC
CCATCAACTGATAAAGGGGG
60
159
12.6
5
D5Rat11
68.75
TCAATATGTGGGTGTGGGC
TGTAATAAGAGACTGTGTTGC
58
155
23.9
6
D5Rat85
92.69
GCCATTTGAAAGGCTTCTGT
ATGTGCCAAACAACAGCAGT
58
247
17.2
7
D5Rat23
109.91
CCCCATATTGGCATGTCTCT
TTCACATGCCAGCTCCATAA
60
175
10.4
8
D5Rat115
120.34
TGATTTATCACGCAAAATAACTC
СTGAATTCTTCCATGTGATCCTG
62
203
20.6
9
D5Rat168
140.92
ATCCCAGGAACCGTGTCTTT
CAAGCCCTGAATGTTGTCCT
60
175
16.4
10
D5Rat93
157.35
GCCCTGTGCTTTAAATTGGA
TCCACAGAAAATGGAGGTGA
60
247
14.3
11
D5Mco10
171.69
GGTACTAGAAATTAGCCG
CTTTGTGAACCCCTGGAG
54
245
Chromosome 6  (length of chromosome 156.9  Mb)
1
D6Rat80
1.11
TGTTGGCTTGGAACTTTTCAG
GCACCTGCATTCCTATGGTT
60
244
29.9
2
D6Rat43
31.03
TTAGAAGGCTATTGCGTGCA
GGGTCAGGCTCTTGACCATA
60
172
17.0
3
D6Rat143
48.07
TGGCAGCTTCTGGTATTTCC
AGAGAAGGAAAGTGCGGACA
60
158
36.5
4
D6Rat23
84.57
ATTTGCGCTCCTATCCACAT
TGGAAAATGTGGTCAGTTTCT
58
141
18.9
5
D6Rat165
103.46
TTCAAAGGGGAGGGAAACTG
TGTCCATCATGTGTCATTGTG
60
170
17.95
6
D6Rat66
121.41
TGAGGAGGACACAGATGTGG
CAGGTCATAATTTCATTTTTCTG
62
202
15.2
7
D6Rat75
136.58
GTGGCCTGCACCTATGTTTC
GGGGATAAGTTGACTTTTTCCT
62
158
8.2
8
D6Rat101
144.76
CCAATACACTCCATGAATACC
AATCTGTCAGCCTATGTAACC
60
150
Chromosome 7  (length of chromosome 143.1  Mb)
1
D7Rat32
25.51
TTCATTGTATCTCCTCCCGG
CAGAGTGGAATGCAGGTGAA
60
162
11.5
2
D7Rat150
36.59
CCAGATGGACTGCAAATTCA
CTCCCATCCCACTCAAAAAG
60
170
17.6
3
D7Rat51
54.56
GTGGGCAAGGAATGAGTAGG
TTTGATGGACTTGGGACTTTC
63
126
18.9
4
D7Rat165
73.47
GGCACGATACAGAGCACAGA
GCTCCTGGAAGCACAGAAAC
62
217
19.4
5
D7Rat42
92.87
GCTGGAGCAGCAAGCTAAGA
ACCATGCCACTGAAAGAGGA
62
190
22.1
6
D7Rat67
114.96
TCACATTGCAGACAAGAGGC
AACAGATGCCAGTTTGACCC
65
203
23.1
7
D7Rat173
138.05
ATGTGAGTGGGTAGGTGGGT
TTAAAGACCTGATGGGGCAG
62
208
Chromosome 8  (length of chromosome 132.4 Mb)
1
D8Rat58
3.46
TTTCTAAGGTTCCAGCAAGAGTG
CCTCCCTCCTTCTCTTCCTG
64
174
18.4
2
D8Rat53
21.87
CGCACAGGTAGGTATGCACA
TCCCAGGATGCTAATGAAGG
62
156
36.4
3
D8Rat149
58.30
GCTGCCAGGCTTGTGTAGTA
ACACTCAAGGTTGGGCTCTG
62
139
2.8
4
D8Rat99
61.1
TGCAGAGAAAACAAGGGAGC
ACCACGAAGGTAAGCAATGG
60
196
9.9
5
D8Rat93
70.98
GGCAGTTTTGTGTGTTTAGC
AGAGTCGCTGCCATCAATTT
58
126
18.1
6
D8Rat21
89.07
GGTGGCTGATCCTGATTCTG
GCTCAGCCAATTGCTACAGG
63
186
11.3
7
D8Rat19
100.35
GGGGATGCATTTAGGACTGA
ATAACGGGTGCTGAACCATC
60
149
14.3
8
D8Rat76
114.69
TCCACCAATTCTTACCTGCC
GTGGGAGCAGATGGTCAAGT
62
223
Chromosome 9  length of chromosome 121.4 Mb)
1
D9Rat44
2.81
AACCAGCAATACTAGAAGGATG
ATTGAGTGTCACTTGCTCTCC
62
175
12.6
2
D9Rat79
15.43
CTCAGCAGGTAGGGCTTTTG
ACCCAGATAAATGCCAGGTG
62
215
12.5
3
D9Rat70
27.91
ATTTGTGATAAAAGCACAGCC
GACTTGCCATGAATGTGATG
58
190
19.0
4
D9Rat63
46.93
CAGTCAGTGCTCAGCCAAGA
TCTCTGCCCTCCAAAATAGG
62
237
25.0
5
D9Rat15
71.89
ATGTCCTTGCAAACTCAGGG
CAGGATTCCAAACGCTAAGG
60
137
5.85
6
D9Rat55
77.74
CATAAGACCATTTGTGTATGC
ATCAATAAAATCCTAACAGAAAG
58
138
15.4
7
D9Rat5
93.17
TGCATTTCTTGTCTGTCTCCA
CCTCTACACATGTGCCATGG
60
108
8.0
8
D9Rat100
101.20
CCAAAACATTCCAGAGCACA
TTTTAGTGTGCATGCAGAGG
58
91
16.7
9
D9Rat47
117.91
CTCATGTCCATCCTTGGAGC
ATAACCTGCCGCCTTTACCT
62
170
Chromosome 10  (length of chromosome 110.6 Mb)
1
D10Rat67
3.41
TTGGGGTCAGTTCTTTCCTG
GTATACAGACAAAACACCACC 
60
202
12.6
2
D10Rat47
15.99
TTTTCCCCTTCTTTCTGACTG
AGCCAGATACAGATAGTTCAC
60
165
6.3
3
D10Rat43
22.27
GCCACAATAATTCAGGTGGTG
CATTTGCACATTGGACCATC
60
149
47.7
4
D10Rat58
69.83
CCTTTGGATTCTTTGTCTCCC
TTGAGGAGGCAGAGACATTG
62
173
13.2
5
D10Wox16
83.20
ACCCCACAATCCAACACTATAC
GCAGGATCTAGTCTCAGCCC
64
127
Chromosome 11  (length of chromosome 93.5 Mb)
1
D11Rat87
1.04
CTTGCCATAAGCATGTGGAA
GAGTGTATGTCTGTGTGTTCA
60
154
14.2
2
D11Rat28
15.26
GATTTCCCTCCTCACTGCAA
ATATTCTCACCCGGAGCTGA
60
249
18.8
3
D11Rat15
34.05
CATGGGCAGTTGGGATTTTA
TGTTGCCCTCTAACCTCCAC
60
173
17.0
4
D11Rat7
51.08
TGTCAGTCTCCCCTGAGCAT
AAGGACTGATGAGGGCAATG
62
160
15.2
5
D11Rat38
66.31
TGCCACAGATTGCATGAGA
CTCAGCAGAATTCTCTGGGC
58
171
23.8
6
D11Rat50
90.09
CAGGAGACCTCCACAGGAAA
GACCTGTCATGTTCCTTGGC
62
236
Chromosome 12  (length of chromosome 54.4 Mb)
1
D12Rat2
13.83
ACTGCCCTGACAGAAAGCAA
CCTACACATGTATGTATGCAC
63
175
6.1
2
D12Rat91
19.95
CACACCTGCTTACTCCCCAT
TTACCTGTGCCCAGCCAAG
62
160
14.25
3
D12Rat93
34.20
CCGCCTTTGACCATTTATGA
GCCCAGCTATTGTGCTTCAT
60
132
20.1
4
D12Rat44
54.30
CACAGGAAGGGAGAGCTGTC
AGACTCTCTGGTGTGGCGAG
63
203
Chromosome 13  (length of chromosome 118.7 Mb)
1
D13Rat120
41.75
GGTATTGCACAGGTGAGCG
ACTGACATCCAAGGGGAGAA
60
141
57.2
2
D13Rat34
98.97
AGCACACGCCAAGTTTTTCC
TGCTTCCTTTTTATTGGCTTG
60
220
Chromosome 14  (length of chromosome 115.1 Mb)
1
D14Rat5
11.87
GGCATCCGTTCTCCATACTG
TTGTCTTCTGACTTGTAGGCT
62
190
15.6
2
D14Rat55
27.51
TTTGATGGGTTTGTTTACTTGG
GGTAGAGTGATATAGGGAGAC
63
219
38.0
3
D14Rat88
65.51
CGTCCTTGATGAGCTCCAGT
TGCCAGAATCCTAATGCTATTC
62
173
1.1
4
D14Rat87
66.61
CGTCCTTGATGAGCTCCAGT
TGCCAGAATCCTAATGCTATTC
62
173
19.4
5
D14Rat18
85.99
CGAGCCGTCAATCATCTTTA
TGGCTCAGTCAGAACAGTGC
63
167
Chromosome 15  (length of chromosome 114.5 Mb)
1
D15Rat76
13.04
TTTTCCTCCAGAGGCTCAGA
GAGGGAGAAAGGGAACTGCT
60
133
17.3
2
D15Rat80
30.31
ATTGTCTGTGGGGCATTCTG
AGGGGTTATTTGGTTCCTGC
60
175
24.6
3
D15Rat112
54.94
TCCACATCATTAAGAATGTTTC
TGTGTTTCAATCTGACTTGCA
58
143
12.2
4
D15Rat68
67.14
ACCTCCAAGGTATGTGCAGG
GCACACCTGGCCAAGCAGAA
62
132
20.0
5
D15Rat23
87.16
GTGGCTAACCTTGAATGTTCT
CACCCACAAACTGTCCACTG
62
137
25.9
6
D15Rat29
113.1
CATGACCTATTTGCATTTGGC
AGAGGTGATGCCAAGTGCTT
60
153
Chromosome 16  (length of chromosome 90.0 Mb)
1
В16Rat87
4.08
GACAGGTACTTAGACAGTCG
TCCTCCTGCTTCTTGATTGG
60
160
6.2
2
D16Rat32
10.28
GAGAATCTAAGTGCTGCCGC
TCCGTTAGGTGCTTTGTTCA
60
125
13.4
3
D16Rat73
23.72
GCTCCAGGAAGCTCGTGATA
GGAAAACAAACAAGGAGCAGA
60
125
8.9
4
D16Rat99
32.65
GATGGCATCTGAGGTTGACC
AGATGGTAGGGATCACATGG
60
205
17.3
5
D16Rat96
49.93
TAAAGGAAGACTGACCCAATC
TGGATAGCACACGAGGAACA
60
201
18.8
6
D16Rat58
68.73
CCCTGCTGTTGTGTTAAACCT
TGCTCTTTACCTGCCTTTCC
60
171
11.0
7
D16Rat48
79.69
GTAACTTGAACCTCTTAACTTG
TCCAAACAAAAATGACATCCG
60
150
Chromosome 17 (length of chromosome 91.8 Mb)
1
D17Rat107
11.84
TGTCATGTGACCAGGTGTGG
TACATGGTGGAGAGAGAACAG
62
180
17.8
2
D17Rat12
29.61
GATTGGAGCCTTCATTAGAAAG
GGCAAAAGGACAGAGGATGA
62
158
15.9
3
D17Mgh3
45.53
TCAATGTAAGTTCAAAACTCAC
GTAAAGCACCTGTCTAGTATG
60
130
5.6
4
D17Mgh5
51.17
TGGAGTGTGGACTGAAAATTG
GAACAAATTGCAGGGCTATGG
62
145
14.6
5
D17Mit4
65.76
GGATGAGTAGACAGGAGTGG
CTTTGTTCTGTTTGGTATGCTC
62
174
22.15
6
D17Wox8
87.91
GGGCTCAGTTCAAGTGAGAG
CAGGTGACTCCCTTAATCGC
62
111
Chromosome 18 (length of chromosome 86.3 Mb)
1
D18Rat111
3.51
TTTTAATCCCTGCCTTGTGC
AAGCCAGTTCTGCAGTGTCA
60
249
9.7
2
D18Rat106
13.19
TGTGCACCCAAATATTTTTAGTT
TTCAGGCAACCGTTCATACA
60
114
19.1
3
D18Rat22
32.31
CCCTGATCCATTGCCTCTGC
GGACAGAGAAACTTTCCTTCG
65
150
8.2
4
D18Rat96
40.54
TGGACATCCTCAATGGACCT
GCAGATCTCTCCTCCACAGC
62
247
7.20
5
D18Mgh1
47.73
GTGATTAGAACATATGCAAAAGGC
AATCTCCTTGACTCTGAAATGACC
66
126
13.0
6
D18Rat40
60.69
AGCAGGGTTATGGTGTCCAG
CTAACCAAGGGGTGGGAAGT
62
152
25.4
7
D18Rat1
86.11
GGATCAGTCAGGAAGTCGGA
AAGGATGTGTTTCACCCACC
61
115
Chromosome 19 (length of chromosome 72.7 Mb)
1
D19Rat47
24.43
GGCAAGCTCCACAGAATAAA
ACAGAGGAAAGGCAAGATAG
58
228
7.3
2
D19Rat26
31.72
AAGGGGAGATGGCTTTGTCT
CTCACCACATCCAAGAGTTG
62
160
19.3
3
D19Rat91
51.02
TGAAGAAGAGAACCAACTCC
CATCCATACTACTCTTCATTC
58
238
12.0
4
D19Rat6
63.06
ACTGGTAGAAAGCAGGGGGT
GTGAGCATACAAGGAAACTGG
62
154
Chromosome 20 (length of chromosome 57.7 Mb)
1
D20Rat47
4.06
AGGTTTGAGCCCCAGGATAC
TGTCTCTTCAACCTCTCTGGC
64
139
19.9
2
D20Rat30
23.99
CCTGCACCCTTGAAATAATCA
TGGGTACTGGCACTCACATG
61
135
25.2
3
D20Rat16
49.18
CTAGATTCAGGCCAGCCAAG
TGAGACCAGGATCGCTTTTT
60
155
Chromosome X (length of chromosome 154.5 Mb)
1
DXRat44
13.10
CTGGGTTCTGTCCTGATGCT
TAACTGTGCCCCCAATAAGG
60
223
12.8
2
DXRat85
25.9
GTGGGTCTTTGACTGACTTC
GGTAGAGAGCCATAGAGAAC
60
224
19.2
3
DXRat26
45.10
CATCAGTCAGCACTGTGGAAA
ACACCCACACAGTCATGTGC
62
152
43.5
4
DXRat93
88.6
TGCTTTGAGAAAATGATGCC
GAGAACCTTAGTCAGGAGAC
58
200
12.9
5
DXRat34
101.46
GGGAAGAACATTGCCACAGT
CCCTGAAGGAGTAAAGAGCC
62
106
27.4
6
DXRat140
128.9
GGTCATGGTTGCAGGAGTTT
TCCCCTTTGCCATTAAAACA
58
155
12.35
7
DXRat104
141.25
GACAGCATAGTTCCACAATAC
TGCTCTCAGTGATCCATAGG
60
156
10.75
8
D0Mco53
152.0
GAGGTGGTTTACTGATCTA
CCAACCTCTGGAACAGTT
62
210

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